BIO-QMS Document Verification Report
Date: 2026-02-14
Task: B.0.1 — Audit All TRACK-Referenced Documents
Author: Claude (Opus 4.6)
Scope: All 17 TRACK files (A-Q), all docs/, dashboards/, prompts/, scripts/ paths
Executive Summary
| Metric | Count | Percentage |
|---|
| Total unique paths referenced | 38 | 100% |
| Exist (exact match) | 20 | 53% |
| Naming mismatch (file exists, wrong ref) | 6 | 16% |
| Future outputs (will be created S2+) | 9 | 24% |
| Truly missing (need stubs) | 3 | 8% |
Verdict: 26/38 references (68%) resolve to existing files after mismatch correction. 9 are future outputs by design. 3 need stubs.
Section 1: Per-TRACK Reference Inventory
Track A: Presentation & Publishing (S1)
| # | Referenced Path | Exists? | Status | Notes |
|---|
| 1 | scripts/generate-publish-manifest.js | YES | Active | A.1.3 manifest generator |
| 2 | docs/ directory (walk) | YES | Active | Source for viewer |
| 3 | dashboards/ directory (walk) | YES | Active | 26 JSX components |
Result: 3/3 references valid. No issues.
Track B: Competitive Intelligence & GTM (S1-S3)
| # | Referenced Path | Exists? | Status | Notes |
|---|
| 1 | prompts/76-competitive-market-analysis-prompt.md | YES | Active | B.1 prompt source |
| 2 | prompts/77-gtm-strategy-prompt.md | YES | Active | B.2 prompt source |
| 3 | prompts/78-cross-artifact-impact-register.md | YES | Active | B.3 prompt source |
| 4 | docs/market/05-market-analysis.md | NO | MISMATCH | Actual: 05-market-opportunity.md |
| 5 | docs/market/10-competitive-moat-analysis.md | NO | MISMATCH | Actual: 08-competitive-moat-analysis.md |
| 6 | dashboards/business/54-competitive-comparison-dashboard.jsx | NO | MISMATCH | Actual: dashboards/planning/54-competitive-comparison.jsx |
| 7 | docs/market/09-go-to-market-strategy.md | YES | Active | B.2.7 update target |
| 8 | docs/product/62-unified-execution-plan.md | YES | Active | B.2.8 update target |
| 9 | docs/reference/30-document-inventory.md | YES | Active | B.4.5 update target |
| 10 | docs/market/market-sizing.md | NO | Future | B.1.1 output (S2) |
| 11 | docs/market/customer-segmentation.md | NO | Future | B.1.2 output (S2) |
| 12 | docs/market/competitive-landscape.md | NO | Future | B.1.3 output (S2) |
| 13 | docs/market/competitive-positioning.md | NO | Future | B.1.4 output (S2) |
| 14 | docs/market/gtm-foundation.md | NO | Future | B.2.1 output (S2) |
| 15 | docs/market/gtm-channels.md | NO | Future | B.2.2 output (S2) |
| 16 | docs/market/gtm-marketing.md | NO | Future | B.2.3 output (S2) |
| 17 | docs/market/gtm-customer-success.md | NO | Future | B.2.4 output (S2) |
| 18 | docs/market/gtm-execution-plan.md | NO | Future | B.2.5 output (S3) |
| 19 | docs/market/gtm-metrics.md | NO | Future | B.2.6 output (S3) |
| 20 | docs/reference/cross-artifact-impact-register.md | NO | Future | B.3.1 output (S3) |
| 21 | dashboards/system/impact-register-dashboard.jsx | NO | Future | B.3.3 output (S3) |
Result: 6/21 exact match, 3 naming mismatches (fixable), 12 future outputs.
Track C: Technical Foundation (S2-S5)
| # | Referenced Path | Exists? | Status | Notes |
|---|
| 1 | docs/architecture/16-prisma-data-model.md | YES | Active | C.1 data model ref |
| 2 | docs/architecture/22-rbac-role-based-access-control.md | NO | MISMATCH | Actual: docs/compliance/21-rbac-model.md + docs/compliance/22-rbac-permissions-matrix.md |
| 3 | docs/state-machine/19-state-machine-architecture.md | NO | MISMATCH | Actual: docs/state-machine/18-state-machine-specification.md + docs/state-machine/19-state-machine-with-guards.md |
| 4 | docs/state-machine/20-capa-deviation-*.md | NO | Future | C.2 output — CAPA/deviation workflows |
| 5 | docs/agents/23-ai-agent-orchestration.md | NO | MISMATCH | Actual: docs/agents/24-agent-orchestration-mapping.md + docs/agents/25-agent-orchestration-spec.md |
| 6 | docs/agents/24-agent-driven-*.md | YES | Active | docs/agents/26-agent-message-contracts.md covers this |
| 7 | docs/compliance/21-electronic-signatures.md | NO | MISMATCH | Actual: docs/architecture/17-e-signature-architecture.md (different dir + name) |
| 8 | docs/architecture/17-security-architecture.md | NO | MISMATCH | Actual: docs/architecture/17-e-signature-architecture.md (name differs) + docs/operations/64-security-architecture.md |
| 9 | docs/architecture/25-integration-architecture.md | NO | MISMATCH | Actual: docs/operations/67-integration-api-strategy.md |
Result: 2/9 exact match, 7 naming/location mismatches (fixable).
Track D: Compliance & Security (S3-S5)
| # | Referenced Path | Exists? | Status | Notes |
|---|
| 1 | docs/compliance/58-gap-analysis-framework.md | NO | MISSING | Needs stub — D.1 critical reference |
| 2 | docs/compliance/21-electronic-signatures.md | NO | MISMATCH | Same as C ref — actual: docs/architecture/17-e-signature-architecture.md |
| 3 | docs/compliance/17-security-architecture.md | NO | MISMATCH | Actual: docs/operations/64-security-architecture.md |
| 4 | docs/compliance/compliance-readiness-matrix.md | NO | MISSING | Needs stub — D.2-D.4 reference |
Result: 0/4 exact match, 2 naming mismatches (shared with C), 2 truly missing.
Track E: Operations & Deployment (S3-S5)
No docs/ file references. All references are external infrastructure (GCP, GitHub Actions, Terraform).
Result: N/A — no document references to verify.
Track F: Documentation & Training (S3+)
| # | Referenced Path | Exists? | Status | Notes |
|---|
| 1 | docs/reference/30-document-inventory.md | YES | Active | F.5.1 update target |
| 2 | scripts/generate-publish-manifest.js | YES | Active | F.5.2 script reference |
Result: 2/2 references valid. No issues.
Track G: Revenue & Billing Operations (S5-S8)
| # | Referenced Path | Exists? | Status | Notes |
|---|
| 1 | docs/executive/60-business-model.md | YES | Active | Pricing tiers reference |
Result: 1/1 valid.
Track H: Customer Operations (S5-S7)
| # | Referenced Path | Exists? | Status | Notes |
|---|
| 1 | docs/operations/68-user-experience-journeys.md | YES | Active | 7 personas, onboarding targets |
Result: 1/1 valid.
Track I: Sales & Business Development (S6-S8)
| # | Referenced Path | Exists? | Status | Notes |
|---|
| 1 | docs/market/09-go-to-market-strategy.md | YES | Active | Compliance-led sales, 3 ICPs |
Result: 1/1 valid.
Track J: Product Management & Analytics (S6-S9)
| # | Referenced Path | Exists? | Status | Notes |
|---|
| 1 | docs/product/11-product-roadmap.md | YES | Active | Phase 3-4 analytics |
Result: 1/1 valid.
Track K: Platform Reliability & Maintenance (S7-S9)
| # | Referenced Path | Exists? | Status | Notes |
|---|
| 1 | docs/operations/66-operational-readiness.md | YES | Active | SLA tiers, error budgets |
| 2 | docs/operations/66-multi-site-management.md | NO | MISSING | Needs stub — K.6 reference |
Result: 1/2 valid, 1 truly missing.
Track L: Data & Business Intelligence (S6-S9)
| # | Referenced Path | Exists? | Status | Notes |
|---|
| 1 | docs/operations/63-data-architecture.md | YES | Active | 22 tables, L0-L4 classification |
Result: 1/1 valid.
Track M: Security Operations (S7-S9)
| # | Referenced Path | Exists? | Status | Notes |
|---|
| 1 | docs/operations/64-security-architecture.md | YES | Active | STRIDE model, 24 vectors |
Result: 1/1 valid.
Track N: Legal & Regulatory Operations (S7-S9)
| # | Referenced Path | Exists? | Status | Notes |
|---|
| 1 | docs/compliance/20-regulatory-compliance-matrix.md | YES | Active | Legal framework |
| 2 | docs/operations/64-security-architecture.md | YES | Active | Cross-border controls |
Result: 2/2 valid.
Track O: Partner Ecosystem (S7-S9)
| # | Referenced Path | Exists? | Status | Notes |
|---|
| 1 | docs/market/09-go-to-market-strategy.md | YES | Active | Partner types, economics |
Result: 1/1 valid.
Track P: Accessibility & Internationalization (S8-S10)
| # | Referenced Path | Exists? | Status | Notes |
|---|
| 1 | docs/operations/68-user-experience-journeys.md | YES | Active | WCAG 2.1 AA |
| 2 | docs/operations/66-operational-readiness.md | YES | Active | i18n architecture |
Result: 2/2 valid.
Track Q: AI & Automation Governance (S8-S10)
| # | Referenced Path | Exists? | Status | Notes |
|---|
| 1 | docs/agents/23-ai-agent-orchestration.md | NO | MISMATCH | Same as C ref — actual: 24-agent-orchestration-mapping.md + 25-agent-orchestration-spec.md |
| 2 | docs/agents/24-agent-driven-*.md | YES | Active | 26-agent-message-contracts.md |
Result: 1/2 exact, 1 mismatch (shared with C).
Section 2: Naming Mismatch Resolution Map
These references exist as files but under different names/locations. TRACK files should be updated.
| # | TRACK(s) | Referenced Path | Actual File | Action |
|---|
| 1 | B | docs/market/05-market-analysis.md | docs/market/05-market-opportunity.md | Fix ref in B |
| 2 | B | docs/market/10-competitive-moat-analysis.md | docs/market/08-competitive-moat-analysis.md | Fix ref in B |
| 3 | B | dashboards/business/54-competitive-comparison-dashboard.jsx | dashboards/planning/54-competitive-comparison.jsx | Fix ref in B |
| 4 | C | docs/architecture/22-rbac-role-based-access-control.md | docs/compliance/21-rbac-model.md + docs/compliance/22-rbac-permissions-matrix.md | Fix ref in C |
| 5 | C | docs/state-machine/19-state-machine-architecture.md | docs/state-machine/18-state-machine-specification.md + docs/state-machine/19-state-machine-with-guards.md | Fix ref in C |
| 6 | C, Q | docs/agents/23-ai-agent-orchestration.md | docs/agents/24-agent-orchestration-mapping.md + docs/agents/25-agent-orchestration-spec.md | Fix ref in C, Q |
| 7 | C, D | docs/compliance/21-electronic-signatures.md | docs/architecture/17-e-signature-architecture.md | Fix ref in C, D |
| 8 | C, D | docs/compliance/17-security-architecture.md / docs/architecture/17-security-architecture.md | docs/operations/64-security-architecture.md | Fix ref in C, D |
| 9 | C | docs/architecture/25-integration-architecture.md | docs/operations/67-integration-api-strategy.md | Fix ref in C |
Section 3: Missing Documents Requiring Stubs
| # | Path | Referenced By | Sprint Needed | Priority |
|---|
| 1 | docs/compliance/58-gap-analysis-framework.md | D.1 | S3 | P1 |
| 2 | docs/compliance/compliance-readiness-matrix.md | D.2-D.4 | S3-S5 | P1 |
| 3 | docs/operations/66-multi-site-management.md | K.6 | S8 | P2 |
Section 4: Future Outputs (No Action Required)
These paths will be created when their parent tasks execute in later sprints.
| # | Path | Created By | Sprint |
|---|
| 1 | docs/market/market-sizing.md | B.1.1 | S2 |
| 2 | docs/market/customer-segmentation.md | B.1.2 | S2 |
| 3 | docs/market/competitive-landscape.md | B.1.3 | S2 |
| 4 | docs/market/competitive-positioning.md | B.1.4 | S2 |
| 5 | docs/market/gtm-foundation.md | B.2.1 | S2 |
| 6 | docs/market/gtm-channels.md | B.2.2 | S2 |
| 7 | docs/market/gtm-marketing.md | B.2.3 | S2 |
| 8 | docs/market/gtm-customer-success.md | B.2.4 | S2 |
| 9 | docs/market/gtm-execution-plan.md | B.2.5 | S3 |
| 10 | docs/market/gtm-metrics.md | B.2.6 | S3 |
| 11 | docs/reference/cross-artifact-impact-register.md | B.3.1 | S3 |
| 12 | dashboards/system/impact-register-dashboard.jsx | B.3.3 | S3 |
Section 5: Sprint Readiness Matrix
| Sprint | Sections | Total Refs | Exist | Mismatch (Fixable) | Future | Missing (Need Stub) | Ready After Fixes? |
|---|
| S1 | A.1-A.3, B.0 | 5 | 5 | 0 | 0 | 0 | YES |
| S2 | A.4-A.6, B.1, C.1-C.2 | 18 | 4 | 5 | 8 | 0 | YES (after mismatch fixes) |
| S3 | B.2, B.3, C.3, D.1 | 12 | 2 | 2 | 6 | 2 | YES (after stubs) |
| S4 | C.4, D.2-D.3 | 4 | 0 | 2 | 0 | 2 | YES (after stubs, shared with S3) |
| S5 | C.5-C.6, D.4-D.5, E.1-E.3, G.1-G.2 | 3 | 2 | 1 | 0 | 0 | YES (after mismatch fixes) |
| S6 | E.4-E.5, G.3-G.4, I.1-I.2, J.1-J.2, L.1 | 3 | 3 | 0 | 0 | 0 | YES |
| S7 | E.3, G.5, H.1-H.2, K.1-K.2, M.1-M.2, N.1-N.3 | 5 | 5 | 0 | 0 | 0 | YES |
| S8 | F.6, G.6, H.3-H.5, I.3, K.3-K.6, L.2-L.3, M.3, O.1, P.1, Q.1 | 5 | 4 | 0 | 0 | 1 | YES (after stub) |
| S9 | J.3-J.4, K.7, L.4, O.2-O.3, P.2, Q.2 | 1 | 1 | 0 | 0 | 0 | YES |
| S10 | P.3, Q.3 | 0 | 0 | 0 | 0 | 0 | YES |
Section 6: Existing File Inventory
docs/ (47 files)
| Directory | Files | Numbers |
|---|
docs/executive/ | 6 | 01, 02, 03, 04, 60, 61 |
docs/market/ | 6 | 05, 06, 07, 08, 09, 10 |
docs/product/ | 2 | 11, 62 |
docs/architecture/ | 6 | 12, 13, 14, 15, 16, 17 |
docs/state-machine/ | 2 | 18, 19 |
docs/compliance/ | 4 | 20, 21, 22, 23 |
docs/agents/ | 3 | 24, 25, 26 |
docs/reference/ | 5 | 27, 28, 29, 30, 31 |
docs/operations/ | 13 | 63-75 |
dashboards/ (26 JSX components)
| Directory | Files | Numbers |
|---|
dashboards/system/ | 8 | 32-39 |
dashboards/compliance/ | 4 | 40-43 |
dashboards/business/ | 8 | 44-51 |
dashboards/planning/ | 6 | 52-56, 60 |
prompts/ (6 files)
| File | Number |
|---|
57-website-build-prompts.md | 57 |
58-gap-closure-prompts.md | 58 |
76-competitive-market-analysis-prompt.md | 76 |
77-gtm-strategy-prompt.md | 77 |
78-cross-artifact-impact-register.md | 78 |
79-universal-document-generator.md | 79 |
scripts/ (1 file)
| File | Purpose |
|---|
generate-publish-manifest.js | Publish manifest generator |
Priority 1: Fix Naming Mismatches in TRACK Files
| TRACK File | Line | Old Reference | New Reference |
|---|
| TRACK-B | 113 | docs/market/05-market-analysis.md through docs/market/10-competitive-moat-analysis.md | docs/market/05-market-opportunity.md through docs/market/10-roi-quantification.md |
| TRACK-B | 117 | dashboards/business/54-competitive-comparison-dashboard.jsx | dashboards/planning/54-competitive-comparison.jsx |
| TRACK-C | 65 | docs/architecture/22-rbac-role-based-access-control.md | docs/compliance/21-rbac-model.md, docs/compliance/22-rbac-permissions-matrix.md |
| TRACK-C | 106 | docs/state-machine/19-state-machine-architecture.md | docs/state-machine/18-state-machine-specification.md, docs/state-machine/19-state-machine-with-guards.md |
| TRACK-C | 160 | docs/agents/23-ai-agent-orchestration.md | docs/agents/24-agent-orchestration-mapping.md, docs/agents/25-agent-orchestration-spec.md |
| TRACK-C | 198 | docs/compliance/21-electronic-signatures.md, docs/architecture/17-security-architecture.md | docs/architecture/17-e-signature-architecture.md, docs/operations/64-security-architecture.md |
| TRACK-C | 227 | docs/architecture/25-integration-architecture.md | docs/operations/67-integration-api-strategy.md |
| TRACK-D | 93 | docs/compliance/21-electronic-signatures.md | docs/architecture/17-e-signature-architecture.md |
| TRACK-D | 125 | docs/compliance/17-security-architecture.md | docs/operations/64-security-architecture.md |
| TRACK-Q | 48 | docs/agents/23-ai-agent-orchestration.md | docs/agents/24-agent-orchestration-mapping.md, docs/agents/25-agent-orchestration-spec.md |
Priority 2: Create Stub Documents
docs/compliance/58-gap-analysis-framework.md — Gap analysis methodology for FDA Part 11, HIPAA, SOC 2docs/compliance/compliance-readiness-matrix.md — Cross-regulation readiness tracking matrixdocs/operations/66-multi-site-management.md — Multi-site deployment and data residency architecture
Section 8: Cross-Reference Matrix (B.0.3)
Result: 18 docs updated with referenced_by frontmatter. 3 stubs already had referenced_by from creation.
Document → TRACK Back-References
| Document | Referenced By | Tracks | Bidirectional? |
|---|
docs/operations/64-security-architecture.md | C.4, D.3, M.1, N.1 | 4 | YES |
docs/market/09-go-to-market-strategy.md | B.2, I.1, O.1 | 3 | YES |
docs/agents/24-agent-orchestration-mapping.md | C.3, Q.1 | 2 | YES |
docs/agents/25-agent-orchestration-spec.md | C.3, Q.1 | 2 | YES |
docs/agents/26-agent-message-contracts.md | C.3, Q.1 | 2 | YES |
docs/architecture/17-e-signature-architecture.md | C.4, D.2 | 2 | YES |
docs/operations/68-user-experience-journeys.md | H.1, P.1 | 2 | YES |
docs/operations/66-operational-readiness.md | K.1, P.1 | 2 | YES |
docs/reference/30-document-inventory.md | B.4, F.5 | 2 | YES |
docs/compliance/20-regulatory-compliance-matrix.md | D.1, N.1 | 2 | YES |
docs/architecture/16-prisma-data-model.md | C.1 | 1 | YES |
docs/compliance/21-rbac-model.md | C.1 | 1 | YES |
docs/compliance/22-rbac-permissions-matrix.md | C.1 | 1 | YES |
docs/state-machine/18-state-machine-specification.md | C.2 | 1 | YES |
docs/state-machine/19-state-machine-with-guards.md | C.2 | 1 | YES |
docs/operations/67-integration-api-strategy.md | C.5 | 1 | YES |
docs/executive/60-business-model.md | G.1 | 1 | YES |
docs/operations/63-data-architecture.md | L.1 | 1 | YES |
docs/product/11-product-roadmap.md | J.1 | 1 | YES |
docs/product/62-unified-execution-plan.md | B.2 | 1 | YES |
docs/compliance/58-gap-analysis-framework.md | D.1 | 1 | YES (stub) |
docs/compliance/compliance-readiness-matrix.md | D.2-D.4 | 1 | YES (stub) |
docs/operations/66-multi-site-management.md | K.6 | 1 | YES (stub) |
Summary
| Metric | Count |
|---|
| Total TRACK-referenced docs (existing) | 23 |
Docs with referenced_by added | 18 |
Stubs created with referenced_by | 3 |
| Scripts (not frontmatter-able) | 2 |
| Bidirectional coverage | 100% |
Non-Frontmatter References
These files are referenced by TRACKs but cannot have YAML frontmatter:
scripts/generate-publish-manifest.js → A.1, F.5dashboards/planning/54-competitive-comparison.jsx → B.1
Report Updated: 2026-02-14
Task: B.0.1 + B.0.3
Author: Claude (Opus 4.6)